CDS

Accession Number TCMCG017C29155
gbkey CDS
Protein Id OMO64822.1
Location join(53785..54195,54338..54994,55086..55535,55782..55954,56111..56255,56342..56434)
GeneID InterPro:IPR003107
Organism Corchorus olitorius
locus_tag COLO4_31795

Protein

Length 642aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01020873.1
Definition RNA-processing protein, HAT helix [Corchorus olitorius]
Locus_tag COLO4_31795

EGGNOG-MAPPER Annotation

COG_category J
Description U3 small nucleolar RNA-associated protein 6
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
KEGG_ko ko:K14557        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03008        [VIEW IN KEGG]
map03008        [VIEW IN KEGG]
GOs GO:0000462        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006364        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016072        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0030490        [VIEW IN EMBL-EBI]
GO:0030515        [VIEW IN EMBL-EBI]
GO:0030684        [VIEW IN EMBL-EBI]
GO:0030686        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032040        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034388        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0042274        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044452        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCGGACGTAGTTCAGTACCGTCTCGAACGCATGCCAGATGAGTTCGAAGACCTCGAACGGCGCGGTCTTTTCACTCGCCAAGAAATAGCCCAGATAGCAAAACAACGCCGCAAGTTCGAATACCGGCTCAAGCGACCTTCTCCTCTGAAGCATGATTTCATTGCCTACATCGACTATGAATTGCATCTTGACTCACTCCGCCAACTTCGCAAGAAAGCTGCCAGTCGTGAACTCGTGCGCCAAGGCAAGAAGAAGACTAAGTCGAGAAAATCGGTCTCTGATTTTGCACCTGTTGCTAGAATCATGGAGATTTATAGACTCGCCGTGATGAGATTCAAAGGAGATATTGAGCTTTGGTTTCGGTATCTTGAATTTTGCAGGCAGAGAAAGAATGGAAGAATGAAAAAGGTTTTAGCTCAAGTGATCAGGTTTCATCCTAAGGTTCCAGGAGTTTGGATATATGCGGCAGCTTGGGAATTTGATCATAATTTGAATGTTGCAGCTGCTCGTGCTTTAATGCAGAGTGGTTTAAGAATGTGTCCTAATTCAGAAGAACTTTGGGTAGAGTATCTTAGAATGGAACTTACTTACCTTAACAAGTTAAAAGCTCGAAAGGTTGCTCTTGGGGAGGATAAAGGAACATTGGTTCGTGATCATAAGGATGACAATGAGAAGAAATGGAAAGAGGAAAATAAAGAATTGTTTATGTCCCTTGATGGTGAAGAAAAAGGAAATGATGATCATGGTTCAGATGAAGAGTCTGAAAAGAAATCGGATATGTTTTTGGAGCATGCCTCTGGTTTACTTAAAACTATCTATGACGGAGCAATTCAAGCAATTCCTTCTAGTTTTAGTCTTAGAAAACAGTTTCTTGAGATATTGGAAGCAATAGAGGTGGCAAATTCAGAAGAGCTTCGTGAAGAGATCCTGAGTGATATGAAGAGAGACTTTTCAGCTGATCCAGAGTATTGGGATTGGCTTGCAAGACTTGAAATGCCTGAGGCCTCAAATACAGGGGAGAAGAATGAAGATGACATGCTTTCTCAGTTGCAGAAGGCAACTCAGGTTTATGAAGAGGCAATAAAAATTGTACCTTCAGCCATGATGTTTAAATTGTATATCAAATTTTTAATGGATGTTATTGCTTCTGAGAAAGGAGAATCGCAAACCTCTGGTTCATCCAATCATTCCTCGAGTAACATTTCACATATATTGAAGGTTTATGAGAAGGCTGAAACAATGGGTTGTTTGACAGAAGAACTTGCTTGTGAATATATTTCATTTTATGAAAAGATTGGGAGATTGGAGGAAGCGAAGAAAGTAGCAGAGAGGCTTTGCAATGGAAAACTTTCAGATTCAGTACAGTTATGGCTTTTAAGGGTTTCACTAGAAATGAGATGTGCCACAAAGAATTCTCCTACACCTAGCAAGGGTGATATGTTATCCATCCTTGACCTTCTGAAAACTGTTATAACTAAAATGTCAATATCAGAAGCTGAGAGCCTCTGGATGATGGCTCTAAAATTATTTGCATCCCGGAAGAAGTATTTTAAGAAGCTGATTGAACTTTCTCTCATTTCGGTAGCTAAATATGGTGGCAGCGATAATGGATTTTCTCTCCCTTCAGCCATAGTTAACTTCATCCTTGAAAAGGATGGAGTTCAACATGCAAGAGAGGTGTATAAACGAAATTGCATTGAATTGGAGTCGAACCTTGCTTCTCTTGGTGATAAAGATTCTCTTGTAAATGCCCGAAAGGTATATGAAGCTGCACTTGCAACTTATGACCAAGATTCTAGCTTATGGAAAGATTACCATTCCCTGGAGACTAAGTTGGGAACATCAGAAACTGTTGCTTCTATCTATTGGCGTGCTCGGAAGACGCTCAAGGATTCTGCTGTAGATTTTACTTCCCCGGATCAATAA
Protein:  
MADVVQYRLERMPDEFEDLERRGLFTRQEIAQIAKQRRKFEYRLKRPSPLKHDFIAYIDYELHLDSLRQLRKKAASRELVRQGKKKTKSRKSVSDFAPVARIMEIYRLAVMRFKGDIELWFRYLEFCRQRKNGRMKKVLAQVIRFHPKVPGVWIYAAAWEFDHNLNVAAARALMQSGLRMCPNSEELWVEYLRMELTYLNKLKARKVALGEDKGTLVRDHKDDNEKKWKEENKELFMSLDGEEKGNDDHGSDEESEKKSDMFLEHASGLLKTIYDGAIQAIPSSFSLRKQFLEILEAIEVANSEELREEILSDMKRDFSADPEYWDWLARLEMPEASNTGEKNEDDMLSQLQKATQVYEEAIKIVPSAMMFKLYIKFLMDVIASEKGESQTSGSSNHSSSNISHILKVYEKAETMGCLTEELACEYISFYEKIGRLEEAKKVAERLCNGKLSDSVQLWLLRVSLEMRCATKNSPTPSKGDMLSILDLLKTVITKMSISEAESLWMMALKLFASRKKYFKKLIELSLISVAKYGGSDNGFSLPSAIVNFILEKDGVQHAREVYKRNCIELESNLASLGDKDSLVNARKVYEAALATYDQDSSLWKDYHSLETKLGTSETVASIYWRARKTLKDSAVDFTSPDQ